Clinical Research Center Publications List

Effects of antioxidant enxyme polymorphisms on ozone-induced lung function.

Chen C, Tager IB, Holland N,  Balmes JR

Eur Respir J. 2007 Oct;30(4):677-83. Epub 2007 Jul 25.

Cerebrospinal fluid neurofilament protein (NFL)–a marker of active HIV- related neurodegeneration/AIDS dementia complex.

Abdulle S, Mellgren Å, Brew B, Cinque P, Hagberg L, Price RW, Rosengren L, Gisslén M J

Neurol 254:8 1026-1032, 2007.

Antihyperlipidemic effects of Pleurotus ostreatus (oyster mushrooms) in HIV-infected individuals with anti-retroviral-induced hypercholesterolemia: Preliminary results.

Abrams DI, Couey P, Shade SB, Aweeka F, Stamets P

North American Research Conference on Complementary and Integrative Medicine Poster Presentation Abstracts 17, 2006.

Antihyperlidipdemic effect of Pleurotus ostreatus in HIV: Results of a pilot proof-of-principle clinical trial.

Abrams DI, Couey P, Shade SB, Kelly ME, Kamanu-Elias N, Stamets P

International Medicinal Mushroom Conference, Slovenia, 2007.

Dehydroepiandrosterone (DHEA) effects on HIV replication and host immunity: A randomized placebo–controlled study.

Abrams DI, Grant R, McCune JM, Lo J, Schambelan M, Bacchetti P, Bredt B, Chang B, Couey P, Epling L, Liegler T, Mulligan K, Shade SB, Sinclair E

AIDS Research and Human Retroviruses 23:1 77-85, 2007.

Cannabis in painful HIV-associated sensory neuropathy: a randomized, placebo- controlled trial.

Abrams DI, Jay C, Shade S, Vizoso H, Reda H, Press S, Kelly ME, Rowbotham M, Petersen K

Neurology 68:515-521, 2007.

Dehydroepiandrosterone (DHEA) and HIV: A randomized placebo-controlled study.

Abrams DI, Shade SB, Couey P, McCune J, Lo J, Bacchetti P, Chang B, Epling L, Liegler T, Grant RM

North American Research Conference on Complementary and Integrative Medicine. Alternative Therapies 12:42, 2006.

Vaporization as a smokeless cannabis delivery system: A Pilot Study.

Abrams DI, Vizoso HP, Shade SB, Jay C, Kelly ME, Benowitz N

Clinical Pharmacology & Therapeutics ePUB ahead of print, 2007.

Vaporization as a smokeless cannabis delivery system: A pilot study.

Abrams DI, Vizoso HP, Shade SB, Jay C, Kelly ME, Benowitz N

North American Research Conference on Complementary and Integrative Medicine. Poster Presentation Abstracts 17, 2006.

Longitudinal evaluation of loss of attachment in HIV- infected women compared to HIV-uninfected women.

Alves M, Mulligan R, Passaro D, Gawell S, Navazesh M: Phelan J, Greenspan D, Greenspan JS

Journal of Periodontology 77:5 773-779, 2006.

Interaction of methotrexate with organic-anion transporting polypeptide 1A2 and its genetic variants.

Badagnani I, Castro RA, Taylor TR, Brett CM, Huang CC, Stryke D, Kawamoto M, Johns SJ, Ferrin TE, Carlson EJ, Burchard EG, Giacomini KM

J Pharmacol Exp Therap 318:521-529, 2006.

Adherence-resistance relationships for protease and non-nucleoside reverse transcriptase inhibitors explained by virological fitness.

Bangsberg DR, Acosta EP, Gupta R, Guzman D, Riley ED, Harrigan RP, Parkin N, Deeks SG

AIDS 20:223-231, 2006.

Disease Clinical Trial Study Group: Agalsidase-beta therapy for advanced Fabry disease: a randomized trial.

Banikazemi M, Bultas J, Waldek S, Wilcox WR, Whitley CB, McDonald M, Finkel R, Packman S, Bichet DG, Warnock DG, Desnick RJ, Fabry Ann

Intern Med 146:77-86, 2007.

Dysfunctional natural killer cells, in vivo, is governed by HIV viremia regardless if the infected individual is on anti-retroviral therapy (research letter).

Barker E, Martinson J, Landay A, Deeks SG

AIDS 2007 [in press]

The normal neonatal brain: MR imaging, diffusion tensor imaging, and 3D MR spectroscopy in healthy term neonates.

Bartha AI, Yap KR, Miller SP, Jeremy RJ, Nishimoto M, Vigneron DB, Barkovich AJ, Ferriero DM

Am J Neuroradiol 28:1015-21, 2007.

A randomized pilot study comparing combination therapy plus Enfuvirtide versus a treatment interruption followed by combination therapy plus Enfuvirtide.

Beatty G, Hunt P, Smith A, Hoh A, Huang W, Martin J, Deeks SG

Antivir Ther 11:315-9,2006.

CYP2A6 genotype and the metabolism and disposition kinetics of nicotine.

Benowitz N, Swan G, Jacob P, Lessov-Schlaggar C, Tyndale R

Clin Pharmacol Ther 80:457–467, 2006.

Calculating the insulin to carbohydrate ratio using the hyperinsulinaemic- euglycaemic clamp-a novel use for a proven technique.

Bevier W , Zisser H, Palerm C, Finan D, Seborg D, Doyle F, Wollitzer S , Jovanovi L

Diabetes-Metab Res 23:6 472–478, 2007.

Candidate genes for congenital diaphragmatic hernia from animal models: sequencing of FOG2 and PDGFR alpha reveals rare variants in diaphragmatic hernia patients.

Bleyl SB, Moshrefi A, Shaw GM, Saijoh Y, Schoenwolf GC, Pennacchio LA, Slavotinek AM

Eur J Hum Genet 15:950-8, 2007.

Congenital hyperinsulinism in an infant caused by a macroscopic insulin-producing lesion.

Bremer AA, Nobuhara KK, Gitelman SE

J Pediatr Endocrinol Metab 20:437- 40, 2007.

Factors in AIDS dementia complex trial design: results and lessons from the abacavir trial.

Brew BJ, Halman M, Catalan J, Sacktor N, Price RW, et al

PLoS Clinical Trials 2:3 e13, 2007.

Microbial translocation is a cause of systemic immune activation in chronic HIV infection.

Brenchley JM, Price DA, Schacker TW, Asher TE, Silvestri G, Kazzaz Z, Lambotte O, Altmann D, Blazar BR, Rodriguez B, Teixeira-Johnson L, Landay A, Martin JN, Hecht FM, Picker LJ, Lederman M, Deeks SG, Douek DC

Nat Med 12:1365-1371, 2007.

Physicians’ use of unclarified medical jargon with diabetes patients.

Castro C, Wilson C, Schillinger D:

Am J Health Beh 31(Suppl 1):S85-S95, 2007.

Effects of human immunodeficiency virus on protracted amenorrhea and ovarian dysfunction.

Cejtin HE, Kalinowski A, Bacchetti P, Taylor RN, Watts DH, Kim S, Massad LS, Preston-Martin S, Anastos K, Moxley M, Minkoff HL

Obstet and Gynecol 108:1423-1431, 2006.

Factors associated with seronegative chronic Hepatitis C virus infection in HIV infection.

Chamie G, Bonacini M, Bangsberg D, Stapleton J, Hall C, Overton E, Scherzer R, Tien P

Clin Infect Dis 44:4 577-583, 2007.

B-type natriuretic peptide levels predict outcomes for children on extracorporeal life support after cardiac surgery.

Chikovani O, Hsu JH, Keller R, Karl TR, Azakie A, Adatia I, Oishi P, Fineman JR:

J Thorac Cardiovasc Surg 134:1179-87, 2007.

Patent ductus arteriosus and its treatment as risk factors for neonatal and neurodevelopmental morbidity.

Chorne N, Leonard C, Piecuch R, Clyman RI

Pediatrics 119:1165-74, 2007.

Exchangeable zinc pool mass (EZP) and fat free mass (FFM) in healthy elderly.

Chung C, Montelius L, Nguyen T, Stookey J, Dare D, Yamamoto V, King J

FASEB J 21:697-712, 2007.

Cerebrospinal fluid markers in central nervous system HIV infection and AIDS dementia complex.

Cinque P, Brew BJ, Gisslén M, Hagberg L, Price RW, In Portegies P, Berger J, eds.

Handbook of Clinical Neurology: AIDS and HIV Dementias 85:3 261–300, 2007.

Patent ductus arteriosus: evidence for and against treatment.

Clyman RI, Chorne N

J Pediatr 150 216-9, 2007.

Indomethacin prophylaxis for preterm infants: the impact of 2 multicentered randomized controlled trials on clinical practice.

Clyman RI, Saha S, Jobe A, Oh W

J Pediatr 150 46-50.e2, 2007.

Interruption of Enfuvirtide in HIV-1-infected adults with incomplete viral suppression on an Enfuvirtide-based regimen.

Deeks SG, Lu J, Hoh R, Neilands TB, Beatty G, Huang W, Liegler T, Hunt P, Martin JN, Kuritzkes DR

J Infect Dis 195:3 387-391, 2007.

Neutralizing antibody responses against autologous and heterologous viruses in acute versus chronic Human Immunodeficiency Virus (HIV) infection: evidence for a constraint on the ability of HIV to completely evade neutralizing antibody responses.

Deeks SG, Schweighardt B, Wrin T, Galovich J, Hoh R, Sinclair E, Hunt P, McCune JM, Martin JN, Petropoulos CJ, Hecht RM

J Virol 80:6155-6164, 2006.

CCL3L1 and CCR5 influence cell-mediated immunity and affect HIV/AIDS pathogenesis via viral entry-dependent and independent mechanisms.

Dolan,MJ, Kulkarni H, Camargo JF, He W, Smith A, Hecht FM, Miura T, Mamtani M, Anaya JM, Pereyra F, Marconi V, Clark RA, Anderson SA, Ahuja SS, Demar J, O’Connor RJ, Lloyd A, Martin J, Agan BK, Walker BD, Deeks SG, Ahuja SK

Nat Immunol 8:1324-1336, 2007.

Central nervous system immune activation is still present after more than four years on effective HAART.

Eden A, Price RW, Spudich S, Fuchs D, Hagberg L, Gisslén M

J Infect Dis, in press, (2008).

Five-year neurodevelopmental outcome of neonatal dehydration.

Escobar GJ, Liljestrand P, Hudes ES, Ferriero DM, Wu YW, Jeremy RJ, Newman TB

J Pediatr 151:127-33 133.e1, 2007.

Health literacy and anticoagulation-related outcomes among patients taking warfarin.

Fang M, Machtinger E, Wang F, Schillinger D

J Gen Intern Med 21:8 841-6, 2006.

Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa.

Flanagan JL, Brodie EL, Weng L, Lynch SV, Garcia O, Brown R, Hugenholtz P, DeSantis TZ, Andersen GL, Wiener-Kronish JP, Bristow J

J Clin Microbiol 45:1954-62, 2007.

The North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD).

Gange SJ, Kitahata MM, Saag MS, Bangsberg DR, Bosch RJ, Brooks JT, Calzavara L, Deeks SG, Eron JJ, Gebo KA, M John Gill, Haas DW, Hogg RS, Horberg MA, Jacobson LP, Justice AC, Kirk GD, Klein MB, Martin JN, McKaig RG, Rodriguez B, Rourke SB, Sterling TR, Freeman AM, Moore RD: Cohort Profile

Int J Epidemiol, 2007.

Hepatotoxicity due to a drug interaction between amodiaquine plus artesunate and efavirenz.

German P, Greenhouse B, Coates C, Dorsey G, Rosenthal P, Charlebois E, Lindegardh N, Havlir D, Aweeka F

Clin Infect Dis 44:6 889-891, 2007.

Long-term outcome and toxicities of intraoperative radiotherapy for high-risk neuroblastoma.

Gillis AM, Sutton E, Dewitt KD, Matthay KK, Weinberg V, Fisch BM, Chan A, Gooding C, Daldrup-Link H, Wara WM, Farmer DL, Harrison MR, Haas-Kogan D

Int J Radiat Oncol Biol Phys 69:858-64, 2007.

Elevated cerebrospinal fluid neurofilament light protein concentrations predict the development of AIDS dementia complex.

Gisslén M, Hagberg L, Brew BJ, Cinque P, Price RW, Rosengren L

J Infect Dis 195:12 1774-1778, 2007.

Diffusion tensor MR imaging tractography of the pyramidal tracts correlates with clinical motor function in children with congenital hemiparesis.

Glenn OA, Ludeman NA, Berman JI, Wu YW, Lu Y, Bartha AI, Vigneron DB, Chung SW, Ferriero DM, Barkovich AJ, Henry RG

AJNR Am J Neuroradiol 28:1796-802, 2007.

Defining and evaluating HIV-related neurodegenerative disease and its treatment targets: A combinatorial approach to use of cerebrospinal fluid molecular biomarkers.

Gisslén M, Hagberg L, Rosengren L, Brew BJ, Cinque P, Spudich S, Price RW

JNIP 2:1 112-119, 2007.

The association of serum ferritin and transferrin receptor concentrations with mortality in women with Human Immunodeficiency Virus infection.

Gordeuk V, Onojobi G, Schneider M, Dawkins F, Delapenha R, Voloshin Y, Von Wyl V, Bacon M, Minkoff H, Levine A, Cohen M, Greenblatt R

Haematologica 91:739-743, 2006.

Association of upper yrunk and visceral adipose tissue volume with insulin resistance in control and HIV- infected subjects in the FRAM study.

Grunfeld C, Rimland D, Gibert C, Powderly W, Sidney S, Shlipak M, Bacchetti P, Scherzer R, Haffner S, Heymsfield S

JAIDS 46:3 283-290, 2007.

Hearing loss, quality of life, and academic problems in long-term neuroblastoma survivors: a report from the Childrens Oncology Group.

Gurney JG, Tersak JM, Ness KK, Landier W, Matthay KK, Schmidt ML, Children’s Oncology Group

Pediatrics 120:1229-36, 2007.

Rate of viral evolution and risk of losing future drug options in heavily pre-treated, HIV-infected patients remaining on a stable, partially suppressive regimen.

Hatano H, Hunt P, Weidler J, Coakley E, Hoh R, Liegler T, Martin JN, Deeks SG

Clin Infect Dis 43:10 1329-1336, 2006.

JC virus granule cell neuronopathy in a child with CD40 ligand deficiency.

Hecht JH, Glenn OA, Wara DW, Wu YW

Pediatr Neurol 36:186-9, 2007.

Mortality among participants in the multicenter AIDS Cohort Study and the Women’s Interagency HIV Study.

Hessol N, Kalinowski A, Benning L, Mullen J, Young M, Palella F, Anastos K, Detels R, Cohen M

Clin Infect Dis 44:2 287-294, 2007.

Pharmacokinetics and pharmacodynamics of lansoprazole in children 13 to 24 months old with gastroesophageal reflux disease.

Heyman MB, Zhang W, Huang B, Chiu YL, Amer F, Winter HS

J Pediatr Gastroenterol Nutr 44:35-40, 2007.

Cytogenetic damage in blood lymphocytes and exfoliated epithelial cells of children with inflammatory bowel disease.

Holland N, Harmatz P, Golden D, Hubbard A, Wu YY, Bae J, Chen C, Huen K, Heyman MB

Pediatr Res 61:209-14, 2007.

B-type natriuretic peptide levels predict outcome after neonatal cardiac surgery.

Hsu JH, Keller RL, Chikovani O, Cheng H, Hollander SA, Karl TR, Azakie A, Adatia I, Oishi P, Fineman JR

J Thorac Cardiovasc Surg 134:939-45, 2007.

Increased carotid intima-media thickness in HIV patients is associated with increased cytomegalovirus-specific T-cell responses.

Hsue PY, Hunt PW, Sinclair E, Bredt B, Franklin A, Killian M, Hoh R, Martin JN, McCune JM, Waters D, Deeks SG

AIDS 20:18 2275-2283, 2006.

Relationship between T Cell activation and CD4 count in HIV-seropositive individuals with undetectable plasma HIV RNA levels in absence of therapy.

Hunt PW, Brenchley J, Sinclair E, McCune JM, Roland M, Page-Shafer K, Hsue P, Emu B, Krone M, Lampiris H, Douek D, Martin JN, Deeks SG

J Infect Dis [in press] 2007.

The independent effect of drug resistance on T cell activation in HIV infection.

Hunt PW, Deeks SG, Bangsberg DR, Moss A, Sinclair E, Liegler T, Bates M, Tsao G, Lampiris H, Hoh R, Martin JN

AIDS 20:691-699, 2006.

Prevalence of CXCR4 tropism among antiretroviral-treated HIV-1-infected patients with detectable viremia.

Hunt PW, Harrigan PR, Huang W, Bates M, Williamson DW, McCune JM, Price PW, Spudich SS, Lampiris H, Hoh R, Leigler T, Martin JN, Deeks SG

J Infect Dis 194:7 926-930, 2006.

Safety and immunogenicity of Towne cytomegalovirus vaccine with or without adjuvant recombinant interleukin-12.

Jacobson MA, Sinclair E, Bredt B, Agrillo L, Black D, Epling CL, Carvidi A, Ho T, Bains R, Girling V, Adler S

Vaccine 24:25 5311-5319, 2006.

Antigen-specific T cell responses induced by Towne cytomegalovirus vaccine in CMV-seronegative vaccine recipients.

Jacobson MA, Sinclair E, Bredt B, Agrillo L, Black D, Epling CL, Carvidi A, Josefowicz SZ, Adler S

J Clin Virol 35:332-7, 2006.

Studies of ocular complications of AIDS research group: Poor predictive value of cytomegalovirus (CMV)-specific T Cell assays for the development of CMV retinitis in AIDS.

Jacobson MA, Tan QX, Girling V, Poon C, Natta MV, Jabs DA, Inokuma M, Maecker HT, Bredt B, Sinclair E

Clin Infect Dis, 2007 (in press).

Observed to expected lung area to head circumference ratio in the prediction of survival in fetuses with isolated diaphragmatic hernia.

Jani J, Nicolaides KH, Keller RL, Benachi A, Peralta CF, Favre R, Moreno O, Tibboel D, Lipitz S, Eggink A, Vaast P, Allegaert K, Harrison M, Deprest J, on behalf of the Antenatal-CDH-Registry Group

Ultrasound Obstet Gynecol 30:67-71, 2007.

Diminished need for folate measurements among indigent populations in the post folic acid supplementation era.

Joelson D, Fiebig E, Wu A

Arch Pathol Lab Med 131:3 477–480, 2007.

CD8 T cell effector maturation in HIV-1-infected children.

Jordan KA, Furlan SN, Gonzalez VD, Karlsson AC, Quigley MF, Deeks SG, Rosenberg MG, Nixon DF, Sandberg JK

Virology 347:1 117-126, 2006.

Ten-year predicted coronary heart disease risk in HIV-infected men and women.

Kaplan R, Kingsley L, Sharrett A, Li X, Lazar J, Tien P, Mack W, Cohen M, Jacobson L, Gange S

Clin Infect Dis 45:8 1074-1081, 2007.

Antiretroviral drug therapy alters the profile of Human Immunodeficiency Virus Type 1-specific T-Cell responses and shifts the immunodominant cytotoxic T-Lymphocyte response from Gag to Pol.

Karlsson A, Chapman J, Heiken B, Hoh R, Kallas E, Martin J, Hecht F, Deeks S, Nixon D

J Virol 81: 11543-11548, 2007.

Predictors of ischemic stroke in the territory of a symptomatic intracranial arterial stenosis.

Kasner SE, Chimowitz MI, Lynn MJ, Howlett-Smith H, Stern BJ, Hertzberg VS, Frankel MR, Levine SR, Chaturvedi S, Benesch CG, Sila CA, Jovin TG, Romano JG, Cloft HJ

Circulation 113:555-563, 2006.

Warfarin vs aspirin for symptomatic intracranial stenosis: Subgroup analyses from WASID.

Kasner SE, Lynn MJ, Chimowitz MI, Frankel MR, Howlett-Smith H, Hertzberg VS, Chaturvedi S, Levine SR, Stern BJ, Benesch CG, Jovin TG, Sila CA, Romano JG

Neurology 67:1275-1278, 2006.

Echocardiography in patients with symptomatic intracranial stenosis.

Kasner SE, Lynn MJ, Jackson B, Pullicino B, Chimowitz MI

J Stroke and Cerebrovasc Dis 16:5 216-219, 2007.

Management of hepatitis C-infected liver transplant recipients at large North American centres: changes in recent years.

Khalili M, Vardanian AJ, Hamerski CM, Wang R, Bacchetti P, Roberts JP, Terrault NA

Clin Transplant 20:1 1–9, 2006.

Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV Type 1 disease.

Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG

AIDS Res Hum Retroviruses 22:12 1260-1266, 2006.

Interstitial deletions of chromosome 6q: genotype-phenotype correlation utilizing array CGH.

Klein OD, Cotter PD, Moore MW, Zanko A, Gilats M, Epstein CJ, Conte F, Rauen KA

Clin Genet 71:260-6, 2007.

Characterization of the novel CYP2A6*21 allele using in vivo nicotine kinetics.

Koudsi N, Mwenifumbo J, Sellers E, Benowitz N, Swan G, Tyndale R

Eur J Clin Pharmacol 0031-6970:481-484, 2006.

Absence of mutations in NR2E1 and SNX3 in five patients with MMEP microcephaly, microphthalmia, ectrodactyly, and prognathism and related phenotypes.

Kumar RA, Everman DB, Morgan CT, Slavotinek A, Schwartz CE, Simpson EM

BMC Med Genet 8:48, 2007.

Hepatitis C virus quasispecies in HIV-infected women: role of injecting drug use and highly active antiretroviral therapy (HAART).

Laskus T, Wilkinson J, Karim R, Mack W, Radkowski M, DeGiacomo M, Nasseri J, Chen Z, Xu J, Kovacs A

Hepatology 46:2 359-70, 2007.

Prevalence and factors associated with dry skin in HIV infection: the FRAM study.

Lee D, Benson C, Lewis C, Grunfeld C, Scherzer R

AIDS. 21:15 2051-2057, 2007.

Single-dose lopinavir-ritonavir acutely inhibits insulin-mediated glucose disposal in healthy volunteers.

Lee G, Lo J, Aweeka F, Schwarz J, Mulligan K, Schambelan M, Grunfeld C

Clin Infect Dis 43:5 658-660, 2006.

Effects of ritonavir and amprenavir on insulin sensitivity in healthy volunteers.

Lee G, Rao M, Mulligan K, Lo J, Aweeka F, Schwarz J, Schambelan M, Grunfeld C

AIDS 21:16 2183-2190, 2007.

Agenesis of the corpus callosum, optic coloboma, intractable seizures, craniofacial and skeletal dysmorphisms: an autosomal recessive disorder similar to Temtamy syndrome.

Li J, Shivakumar S, Wakahiro M, Mukherjee P, Barkovich AJ, Slavotinek A, Sherr EH

Am J Med Genet A 143:1900-5, 2007.

Use of the motor performance checklist to study motor outcomes in 5-year-olds.

Liljestrand P, Jeremy RJ, Wu YW, Ferriero DM, Escobar GJ, Newman TB

J Paediatr Child Health. [Epub ahead of print], 2007

Rapid emergence of enfuvirtide resistance in HIV-1-infected patients: Results of a clonal analysis

Lu J, Deeks SG, Hoh R, Beatty G, Kuritzkes BA, Martin JN, Kuritzkes DR

JAIDS 43:1 60-64, 2006.

Comparison of an interferon-gamma release assay with tuberculin skin testing in HIV-infected individuals.

Luetkemeyer AF, Charlebois ED, Flores LL, Bangsberg DR, Deeks SG, Martin JN, Havlir DV

Am J Respir Crit Care Med 175:737-42, 2007.

A Visual Medication Schedule to Improve Anticoagulant Care: A randomized controlled trial.

Machtinger E, Wang F, Chen L, Rodríguez M, Wu S, Schillinger D

Joint Com J Qual and Pat Safe 33:10 625-635, 2007.

Performance of Human Immunodeficiency Virus Type 1 gp41 assays for detecting enfuvirtide (T-20) resistance mutations.

Marcial M, Lu J, Deeks SG, Ziermann R, Kuritzkes DR

J Clin Microbiol 44:9 3384-7, 2006.

Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1.

Martin MP, Qi Y, Gao X, Yamada E, Martin JN, Pereyra F, Colombo S, Brown EE, Shupert L, Phair J, Goedert JJ, Buchbinder S, Kirk GD, Telenti A, Connors M, O’Brien SJ, Walker BD, Parham PP, Deeks SG, McVicar DW, Carrington M

Nat Genetics 39:733-40, 2007.

Differential gene expression in CD8+ cells from HIV-1-infected subjects showing suppression of HIV replication.

Martinez-Mariño B, Foster H, Hao Y, Levy J

Vaccine 362:1 217-225, 2007.

Contraceptive use among U.S. women with HIV.

Massad L, Evans C, Wilson T, Golub E, Sanchez-Keeland L, Minkoff H, Weber K, Watts D

J Women's Health 16:5 657-666, 2007.

Outcomes after treatment of cervical intraepithelial neoplasia among women with HIV.

Massad L, Fazzari MJ, Anastos K, Klein RS, Minkoff H, Jamieson DJ, Duerr A, Celentano D, Gange S, Cu-Uvin S, Young M, Watts DH, Levine AM, Schuman P, Harris T, Strickler HD

J Low Gen Tract Dis 11:2 90-97, 2007.

Phase II study on the effect of disease sites, age, and prior therapy on response to iodine-131-metaiodobenzylguanidine therapy in refractory neuroblastoma.

Matthay KK, Yanik G, Messina J, Quach A, Huberty J, Cheng SC, Veatch J, Goldsby R, Brophy P, Kersun LS, Hawkins RA, Maris JM

J Clin Oncol 25:1054-60, 2007.

Temporal and anatomic risk profile of brain injury with neonatal repair of congenital heart defects.

McQuillen PS, Barkovich AJ, Hamrick SE, Perez M, Ward P, Glidden DV, Azakie A, Karl T, Miller SP

Stroke 38:736-41, 2007.

Regional and central venous oxygen saturation monitoring following pediatric cardiac surgery: concordance and association with clinical variables.

McQuillen PS, Nishimoto MS, Bottrell CL, Fineman LD, Hamrick SE, Glidden DV, Azakie A, Adatia I, Miller SP

Pediatr Crit Care Med 8:154-60, 2007.

Antiretroviral treatment reduces increased CSF neurofilament protein (NFL) in HIV-1 infection.

Mellgren Å, Price RW, Hagberg L, Rosengren L, Brew BJ, Gisslén M

Neurology 69:1536-1541, 2007.

Abnormal brain development in newborns with congenital heart disease.

Miller SP, McQuillen PS, Hamrick S, Xu D, Glidden DV, Charlton N, Karl T, Azakie A, Ferriero DM, Barkovich AJ, Vigneron DB

N Engl J Med 357:1928-38, 2007.

A stable isotope-mass spectrometric method for measuring human spermatogenesis kinetics in vivo.

Misell L, Holochwost D, Boban D, Santi N, Shefi S, Hellerstein M, Turek P

J Urology 175:1 242-246, 2007.

HPV infections in adolescents.

Moscicki AB

Dis Markers 23 229-34, 2007.

Effects of metformin and rosiglitazone in HIV-infected patients with hyperinsulinemia and elevated waist/hip ratio.

Mulligan K, Yang Y, Wininger D, Koletar S, Parker R, Alston-Smith B, Schouten J, Fielding R, Basar M, Grinspoon S

AIDS. 21:1 47-57, 2007.

Identification of novel CYP2A6*1B ariants: The CYP2A6*1B allele is associated with faster in vivo nicotine metabolism.

Mwenifumbo J, Lessov-Schlaggar C, Tan Q, Krasnow R, Swan G, Benowitz N, Tyndale R

Clin Pharmacol Ther, advance online publication, 2007.

HLA class I binding promiscuity of the CD8 T-cell epitopes of human papillomavirus type 16 E6 protein.

Nakagawa M, Kim KH, Gillam TM, Moscicki AB

J Virol 81 1412-23, 2007.

Cervical shedding of HIV-1 RNA among women with low levels of viremia while receiving highly active antiretroviral therapy.

Neely M, Benning L, Xu J, Strickler H, Greenblatt R, Minkoff H, Young M, Bremer J, Levine A, Kovacs A:

JAIDS 44:1 38-42, 2007.

IL-2 production correlates with effector cell differentiation in HIV- specific CD8+ T cells.

Nomura LE, Emu B, Hoh R, Haaland P, Deeks SG, Martin JN, McCune JM, Nixon DF, Maecker HT

AIDS Res Ther 3:18, 2006.

Impact of metabolic syndrome on prognosis of symptomatic intracranial atherostenosis.

Ovbiagele B, Saver JL, Lynn MJ, Chimowitz M:

Neurology 661344:1349, 2006.

Loss of T cell responses following long-term cryopreservation.

Owen RE, Sinclair E, Emu B, Heitman JW, Hirschkorn DF, Epling CL, Tan QX, Custer B, Harris JM, Jacobson MA, McCune JM, Martin JN, Hecht FM, Deeks SG, Norris PJ

J Imm Methods 326:1-2 93-115, 2007.

Phase I/II trial of intermittent subcutaneous IL-2 administration in pediatric patients with moderate immune suppression: results of Pediatric AIDS Clinical Trials Study 402.

Pahwa S, Muresan P, Sleasman J, Fenton T, Moye J, Deveikis A, Wara D, Van Dyke R, Pediatric Aids Clinical Trials Study 402 team.

J Allergy Clin Immunol 119:1538-41, 2007.

Agenesis of the corpus callosum: genetic, developmental and functional aspects of connectivity.

Paul LK, Brown WS, Adolphs R, Tyszka JM, Richards LJ, Mukherjee P, Sherr EH

Nat Rev Neurosci 8:287-99, 2007.

History-adjusted marginal structural models for estimating time-varying effect modification.

Petersen M, Deeks SG, Martin JN, Van der Laan M

Am J of Epidemiology 166:985-993, 2007.

Individualized treatment rules generating candidate clinical trials.

Petersen ML, Deeks SG, Martin J, Van der Laan M

Stat Med 26:25 4578-4601, 2007.

Health care discrimination, processes of care, and diabetes patients’ health status.

Piette J, Bibbins-Domingo K, Schillinger D

Patient Ed Counsel 60:1 41-8, 2006.

Biomarkers of HIV-1 central nervous system infection and injury.

Price RW, Epstein LG, Becker JT, Cinque P, Gisslen M, Pulliam L, McArthur JC

Neurology 69:1781-1788, 2007.

Enfuvirtide cerebrospinal fluid (CSF) pharmacokinetics and potential use in defining CSF HIV-1.

Price RW, Parham R, Lu J, Wring S, Baker B, Sailstad J, Hoh R, Liegler T, Spudich S, Kuritzkes DR, Deeks SG

Origin, submitted.

Antiretroviral therapy and central nervous system HIV-1 infection.

Price RW and Spudich S

J Infect Dis, in press.

Randomized, double-blind, placebo-controlled trial of Cephalexin for treatment of uncomplicated skin abscesses in a population at risk for community-acquired methicillin-resistant staphylococcus aureus infection.

Rajendran P, Young D, Maurer T, Chambers H, Perdreau-Remington F, Ro P, Harris H

Antimicrob Agents Ch 51:4044-4048, 2007.

HRAS and the Costello syndrome.

Rauen KA

Clin Genet 71:101-8, 2007.

Phase I study of intraventricular administration of rituximab in patients with recurrent CNS and intraocular lymphoma.

Rubenstein JL, Fridlyand J, Abrey L, Shen A, Karch J, Wang E, Issa S, Damon L, Prados M, McDermott M, OBrien J, Haqq C, Shuman M

J Clin Oncol 25:1350-6, 2007.

Clinical resistance to enfuvirtide does not affect susceptibility of human immunodeficiency virus type 1 to other classes of entry inhibitors.

Ray N, Harrison JE, Blackburn LA, Martin JN, Deeks SG, Doms RW

J Virol 81:3240-50, 2007.

Predictive value of plasma HIV RNA level on rate of CD4 T-cell decline in untreated HIV infection.

Rodriguez B, Sethi AK, Cheruvu VK, Mackay W, Bosch RJ, Kitahata M, Boswell SL, Matthews C, Bangsberg D, Martin J, Whalen CC, Sieg S, Yadavalli S, Deeks SG, Lederman MM

JAMA 296:1498-506, 2006.

Cotinine levels in relation to smoking behavior and addiction in young adolescent smokers.

Rubinstein ML, Thompson PJ, Benowitz NL, Shiffman S, Moscicki AB

Nicotine Tob Res 9:129-35, 2007.

Shared decision making and the experience of partnership in primary care.

Saba G, Wong ST, Schillinger D, Fernandez A, Somkin CP, Wilson C, Grumbach K

Ann Fam Med 4:1 54-62, 2006.

Is self-efficacy associated with diabetes self-management across race/ethnicity and health literacy?

Sarkar U, Fisher L, Schillinger D

Diabetes Care 29:4 823-9, 2006.

American Cancer Society guideline for human papillomavirus HPV vaccine use to prevent cervical cancer and its precursors.

Saslow D, Castle PE, Cox JT, Davey DD, Einstein MH, Ferris DG, Goldie SJ, Harper DM, Kinney W, Moscicki AB, Noller KL, Wheeler CM, Ades T, Andrews KS, Doroshenk MK, Kahn KG, Schmidt C, Shafey O, Smith RA, Partridge EE, Gynecologic Cancer Advisory Group, Garcia F

CA Cancer J Clin 57:7-28, 2007.

Does literacy mediate the relationship between education and health outcomes?

Schillinger D, Barton L, Karter A, et al.

A study of a low-income population with diabetes. Pub Health Rep.121:3 245-54, 2006.

Seeing in 3-D: Examining the reach of diabetes self-management support strategies in a public healthcare system.

Schillinger D, Hammer H, Wang F, et al

Health Ed Behav. [Epub ahead of print], 2007.

The importance of establishing regimen concordance in preventing medication errors in anticoagulant care.

Schillinger D, Machtinger E, Wang F, Rodriguez M, Bindman A

J Health Comm 11:6 555-67, 2006.

Language, literacy, and communication regarding medication in an anticoagulation clinic: A comparison of verbal vs. visual assessment.

Schillinger D, Wang F, Palacios J, et al

J Health Commu. 11:7 651-64, 2006.

Effect of genetic variation in the organic cation transporter 1 (OCT1) on metformin action.

Shu Y, Sheardown S, Brown C, Owen R, Zhang S, Castro R, Ianculescu A, Yue L, Lo J, Burchard E, Brett C, Giacomini K

J Clin Invest 117:1422-1431, 2007.

Antiretroviral treatment effect on immune activation reduces cerebrospinal fluid HIV-1 infection.

Sinclair E, Ronquillo R, Lollo N, Deeks SG, Hunt P, Yiannoutsos CT, Spudich S, Price PW

JAIDS 2008 [in press].

Studies of ocular complications of AIDS research group. Protective immunity to cytomegalovirus (CMV) retinitis in AIDS is associated with CMV-specific T cells that express interferon-gamma and Interleukin-2 and have a CD8+ cell early maturational phenotype.

Sinclair E, Tan QX, Sharp M, Girling V, Poon C, Natta MV, Jabs DA, Inokuma M, Maecker HT, Bredt B, Jacobson MA

J Infect Dis 194:1537-46, 2006.

Single gene disorders associated with congenital diaphragmatic hernia.

Slavotinek AM

Am J Med Genet C Semin Med Genet 145:172-83, 2007.

Treatment benefit on cerebrospinal fluid HIV-1 levels in the setting of systemic virological suppression and failure.

Spudich S, Lollo N, Liegler T, Deeks SG, Price RW

J Infect Dis 194:1686–96, 2006.

Use of a modified informed consent process among vulnerable patients: A descriptive study.

Sudore R, Landefeld C, Williams B, Barnes D, Lindquist K, Schillinger D

J Gen Intern Med 21:8 867-73, 2006.

Genetic and environmental sources of variation in heart rate response to infused nicotine in twins.

Swan G, Lessov-Schlaggar C, Krasnow R, Wilhelmsen K, Jacob P, Benowitz N

Cancer Epidem Biomar 16:1057-1064, 2007

The influence of depression on diabetes-related communication among ethnically diverse patients.

Swenson S, Stewart A, Schillinger D

Med Care, in press, 2007.

Microalbuminuria in HIV infection.

Szczech L, Grunfeld C, Scherzer R, Canchola J, Van der Horst C, Sidney S, Wohl D, Shlipak M

AIDS. 21(8):1003-1009, 2007.

Antiretroviral therapies associated with lipoatrophy in HIV-infected women.

Tien PC, Barrón Y, Justman J, Hyman C, Cohen M, Young M, Kovacs A, Cole S

AIDS Patient Care STDS. 21(5):297-305, 2007.

The study of fat redistribution and metabolic change in HIV infection (FRAM): methods, design, and sample characteristics.

Tien PC, Benson C, Zolopa AR, Sidney S, Osmond D, Grunfeld C

Am J Epidemiology 163:860-869, 2006.

Relation of Stavudine discontinuation to anthropometric changes among HIV-infected women.

Tien PC, Schneider M, Cole S, Justman J, French A, Young M, DeHovitz J, Nathwani N, Brown T

JAIDS 44(1):43-48, 2007.

Detection of single clone deletions using array CGH: identification of submicroscopic deletions in the 22q11.2 deletion syndrome as a model system.

Tokuyasu TA, Cotter PD, Segraves R, Harris J, Elder ME, Gonzales M, Pinkel D, Albertson DG, Rauen KA:

Am J Med Genet A 143:925-32, 2007.

Relationship between blood pressure and stroke recurrence in patients with intracranial arterial stenosis.

Turan T, Cotsonis G, Lynn M, Chaturvedi S, Chimowitz M, and for the Warfarin-Aspirin Symptomatic Intracranial Disease (WASID) Trial Investigators

Circulation 115:2969-2975, 2007.

Pharmacokinetics and safety of indinavir in human-immunodeficiency virus-infected pregnant women.

Unadkat JD, Wara DW, Hughes MD, Mathias AA, Holland DT, Paul ME, Connor J, Huang S, Nguyen BY, Watts DH, Mofenson LM, Smith E, Deutsch P, Kaiser KA, Tuomala RE

Antimicrob Agents Chemother 51:783-6, 2007.

Executive functioning in children and adolescents with phenylketonuria.

VanZutphen KH, Packman W, Sporri L, Needham MC, Morgan C, Weisiger K, Packman S

Clin Genet 72:13-8, 2007.

Delayed secretory pathway contributions to VLDL-triglycerides from plasma NEFA, diet, and de novo lipogenesis in humans.

Vedala A, Wang W, Neese RA, Christiansen MP, Hellerstein MC

J Lipid Res 47:2562-2574, 2006.

Does calcium supplementation increase bone mineral density in healthy children?

Von Scheven E

Nat Clin Pract Rheumatol 3:206-7, 2007.

Pediatric bone density and fracture.

Von Scheven E

Curr Osteoporos Rep 5:128-34 2007.

Gender differences in outcomes among patients with symptomatic intracranial arterial stenosis.

Williams J, Chimowitz M, Cotsonis G, Lynn M, Waddy S

Stroke 38:2055-2062, 2007.

Reliability of the lung-to-head ratio as a predictor of outcome in fetuses with isolated left congenital diaphragmatic hernia at gestation outside 24-26 weeks.

Yang SH, Nobuhara KK, Keller RL, Ball RH, Goldstein RB, Feldstein VA, Callen PW, Filly RA, Farmer DL, Harrison MR, Lee H

Am J Obstet Gynecol 197:30.e1-7, 2007.

Persistent intrathecal immune activation in HIV-1-infected individuals on antiretroviral therapy

Yilmaz A, Price RW, Spudich S, Fuchs D, Hagberg L, Gisslén M

JAIDS, in press, 2007.

Association between rates of HIV testing and elimination of written consents in San Francisco.

Zetola N, Klausner J, Haller B, Nassos P, Katz M

JAMA 297:1061-1062, 2007.

Effect of early and late GB virus C viraemia on survival of HIV-infected individuals: a meta-analysis.

Zhang W, Chaloner K, Tillmann HL, Williams CF, Stapleton JT

HIV Medicine 7:3 173–180, 2006.